SERVER FOR COMPUTING/PREDICTING DEPTH, CAVITY SIZES, LIGAND BNDING SITES AND pKa
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Input file
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:
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Residue Depth Applications
DEPTH COMPUTATION
Output
Number of solvating cycles
:
Solvent neighbourhood radius (Å)
:
Minimum number of neighbourhood
waters (Allowed range 1-5)
:
Atomic
Residue-wise (Jmol)
Main Chain
Side Chain
Polar Side Chain
Non-Polar Side Chain
BINDING SITE PREDICTION
Output
Use Evolutionary Information
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Minimum number of neighbourhood
waters (Allowed range 1-5)
:
Probability threshold
:
3D Rendition (in Jmol)
pKa PREDICTION
Output
Minimum number of neighbourhood
waters (Allowed range 1-5)
:
Show Results in Plots
CAVITY DETECTION
Output
Minimum number of neighbourhood
waters (Allowed range 1-5)
:
3D Rendition (in Jmol)
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