SERVER FOR COMPUTING/PREDICTING DEPTH, CAVITY SIZES, LIGAND BNDING SITES AND pKa


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Residue Depth Applications

DEPTH COMPUTATIONOutput
Number of solvating cycles:
Solvent neighbourhood radius (Å) :
Minimum number of neighbourhood
waters (Allowed range 1-5)
:
Atomic
Residue-wise (Jmol)
Main Chain
Side Chain
Polar Side Chain
Non-Polar Side Chain

BINDING SITE PREDICTIONOutput
Use Evolutionary Information
(Please allow for about 3 minutes before the page refreshes)
Minimum number of neighbourhood
waters (Allowed range 1-5)
:
Probability threshold :
3D Rendition (in Jmol)

pKa PREDICTIONOutput
Minimum number of neighbourhood
waters (Allowed range 1-5)
:
Show Results in Plots

CAVITY DETECTIONOutput
Minimum number of neighbourhood
waters (Allowed range 1-5)
:
3D Rendition (in Jmol)
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