DEPTH STATISTICS


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Run Depth Computation and Cavity Prediction

Binding Cavity Prediction Benchmark

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Depth Preference of Amino Acid Residues in Globular Protein


Run-time statistics

note: benchmark on single domain globular proteins with 25 iterations
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Depth Preference of Amino Acid Residues in Globular Protein

Training-set

  • data source: Protein Data Bank
  • database size: 1457
  • single domain globular protein
  • resolution <= 2Å, R-factor <= 25%
  • chain length between 100 - 200
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