Results for the query structure 5kvj

Database Search Result
Name of database:RNA (493 PDB NR 90)
Size of database:493 structures
Download the result as text file:Download
Download all the files:Download the detailed alignment, superimposed, and clique files for top 100 hits
No.
Target Structure
Z-score
Structure Overlap
RMSD
# C3' atoms of target
# C3' atoms of query
Match Size
#Identical Residues
Target SCOP ids
Target Description
1 3hga 3.69 100.00 0.21 5 32 5 2 No_SCOP_id 5'-R(*UP*(US5)P*CP*GP*CP*G)-3'
2 1qc0 3.69 100.00 0.31 57 32 32 10 No_SCOP_id 5'-R(*UP*AP*GP*CP*GP*GP*UP*GP*C)-3' & 5'-R(GP*CP*AP*CP*CP*GP*CP*UP*AP*C)-3' & 5'- R(*GP*CP*AP*CP*CP*GP*UP*UP*GP*GP*UP*AP*GP*CP*GP*GP*UP*GP*C) -3' & 5'- R(*GP*CP*AP*CP*CP*GP*CP*UP*AP*CP*CP*AP*AP*CP*GP*GP*UP*GP*C) -3'
3 1osu 3.69 100.00 0.34 6 32 6 2 No_SCOP_id RNA (5'-R(*UP*UP*CP*GP*CP*G)-3')
4 2a0p 3.69 100.00 0.36 14 32 14 6 No_SCOP_id 5'-R(*CP*CP*(S4C)P*CP*GP*GP*GP*G)-3'
5 259d 3.69 100.00 0.38 16 32 16 8 No_SCOP_id RNA (5'-R(*CP*CP*CP*CP*GP*GP*GP*G)-3')
6 4e59 3.69 100.00 0.40 14 32 14 1 No_SCOP_id RNA DUPLEX CONTAINING CCG REPEATS
7 3nd3 3.69 100.00 0.41 16 32 16 3 No_SCOP_id 5'-R(*AP*GP*AP*GP*AP*AP*GP*AP*UP*UP*UP*UP*UP*UP*UP*U)-3'
8 1rxb 3.69 100.00 0.42 16 32 16 8 No_SCOP_id RNA (5'-R(*CP*CP*CP*CP*GP*GP*GP*G)-3')
9 439d 3.69 100.00 0.43 16 32 16 2 No_SCOP_id RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3') & RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3')
10 405d 3.69 100.00 0.45 32 32 32 9 No_SCOP_id RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)- 3')
11 1rxa 3.69 100.00 0.48 8 32 8 2 No_SCOP_id RNA (5'-R(*CP*CP*CP*CP*GP*GP*GP*G)-3')
12 1g2j 3.69 100.00 0.50 7 32 7 2 No_SCOP_id 5'-R(*CP*CP*CP*(PYY)P*GP*GP*GP*G)-3'
13 2v7r 3.69 100.00 0.57 14 32 14 8 No_SCOP_id HUMAN TRNAGLY MICROHELIX & HUMAN TRNAGLY MICROHELIX
14 333d 3.69 100.00 0.58 8 32 8 2 No_SCOP_id RNA (5'-R(*CP*GP*CP*AP*IP*GP*CP*G)-3')
15 2vuq 3.69 100.00 0.59 14 32 14 6 No_SCOP_id 5'-R(*GP*CP*AP*UP*UP*GP*GP)-3' & 5'-R(*CP*CP*AP*AP*UP*GP*CP)-3'
16 402d 3.57 100.00 0.53 16 32 16 9 No_SCOP_id RNA(5'-R(*CP*GP*CP*CP*AP*GP*CP*G)-3')
17 438d 3.57 100.00 0.64 16 32 16 4 No_SCOP_id RNA (5'-R(*GP*GP*GP*CP*GP*CP*UP*CP*C)-3')
18 420d 3.57 100.00 0.70 32 32 32 9 No_SCOP_id RNA (5'- R(*GP*CP*AP*GP*AP*GP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3')
19 472d 3.46 100.00 0.78 16 32 16 0 No_SCOP_id RNA (5'-R(*GP*UP*GP*UP*UP*UP*AP*C)-3') & RNA (5'-R(*GP*UP*AP*GP*GP*CP*AP*C)-3')
20 2v6w 3.42 100.00 0.61 14 32 14 0 No_SCOP_id 5'-R(*GP*GP*AP*GP*AP*GP*AP)-3' & 5'-R(*UP*CP*UP*CP*UP*CP*CP)-3'
21 3gvn 3.42 100.00 0.71 14 32 14 2 No_SCOP_id 5'-R(*GP*GP*UP*GP*AP*GP*G)-3' & 5'-R(*CP*CP*UP*CP*AP*CP*C)-3'
22 3r1e 3.42 100.00 0.73 14 32 14 1 No_SCOP_id RNA (5'-R(*GP*CP*(GRB)P*GP*CP*GP*GP*C)-3')
23 4e6b 3.34 100.00 0.71 16 32 16 2 No_SCOP_id 5'-R(P*CP*GP*GP*CP*GP*GP*CP*GP*GP*CP*CP*UP*GP*CP*UP*GP*CP*U P*G)-3' & 5'-R(P*CP*GP*GP*CP*GP*GP*CP*GP*GP*CP*CP*UP*GP*CP*UP*GP*CP*U P*G)-3'
24 3nd4 3.22 100.00 0.82 16 32 16 3 No_SCOP_id 5'-R(*AP*GP*AP*GP*AP*AP*GP*AP*UP*CP*UP*UP*CP*UP*CP*U)-3'
25 2q1r 3.22 100.00 0.86 12 32 12 4 No_SCOP_id RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*AP*GP*CP*G)- 3')
26 4e48 3.11 100.00 1.01 60 32 32 15 No_SCOP_id 5'-R(P*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*U P*GP*C)-3'
27 433d 3.03 100.00 1.03 28 32 28 5 No_SCOP_id 5'-R(*GP*GP*UP*AP*UP*UP*GP*CP*GP*GP*UP*AP*CP*C)- 3'
28 3czw 3.03 100.00 1.15 14 32 14 6 No_SCOP_id RNA (5'- R(*G*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3')
29 2g91 2.95 100.00 1.35 15 32 15 4 No_SCOP_id 5'-R(*GP*GP*UP*GP*CP*GP*CP*(CBR)P*C-3'
30 2r22 2.83 100.00 1.06 26 32 26 7 No_SCOP_id RNA (5'- R(*GP*CP*GP*UP*UP*UP*GP*AP*AP*AP*CP*GP*C)-3')
31 1z7f 2.82 87.50 0.81 48 32 28 8 No_SCOP_id 5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'
32 2r21 2.68 100.00 1.08 24 32 24 6 No_SCOP_id RNA (5'-R(*GP*CP*GP*UP*UP*(5BU) P*GP*AP*AP*AP*CP*GP*C)-3')
33 2r20 2.61 100.00 1.15 24 32 24 6 No_SCOP_id RNA (5'-R(*GP*CP*GP*UP*UP*(5BU) P*GP*AP*AP*AP*CP*GP*C)-3')
34 255d 2.61 100.00 1.25 12 32 12 2 No_SCOP_id RNA (5'-R(*GP*GP*AP*CP*UP*UP*CP*GP*GP*UP*CP*C)- 3')
35 2g92 2.59 100.00 1.30 22 32 22 10 No_SCOP_id 5'-R(*CP*GP*CP*(NF2)P*AP*AP*UP*UP*AP*GP*CP*G)-3'
36 4e5c 2.59 100.00 1.35 38 32 32 6 No_SCOP_id 5'-R(P*GP*GP*CP*GP*GP*CP*GP*GP*CP*GP*GP*CP*UP*GP*CP*UP*GP*C P*C)-3'
37 205d 2.53 100.00 1.20 24 32 24 9 No_SCOP_id RNA (5'-R(*GP*GP*AP*CP*UP*UP*UP*GP*GP*UP*CP*C)- 3')
38 3szx 2.53 96.88 1.27 38 32 31 8 No_SCOP_id RNA (5'- R(P*UP*UP*GP*GP*GP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*CP*C)-3')
39 1y73 2.53 96.88 1.34 46 32 31 5 No_SCOP_id 5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP *CP*AP*AP*G)-3'
40 165d 2.53 100.00 1.43 16 32 16 4 No_SCOP_id DNA/RNA (5'-R(*GP*CP*UP*UP*CP*GP*GP*CP*)- D(*(BRU))-3')
41 4jf2 2.47 96.88 1.13 76 32 31 8 No_SCOP_id PREQ1-II RIBOSWITCH
42 3dim 2.47 100.00 1.39 173 32 32 6 No_SCOP_id RNA (174-MER)
43 3d0x 2.47 100.00 1.46 161 32 32 13 No_SCOP_id RNA (161-MER)
44 157d 2.45 100.00 1.31 24 32 24 10 No_SCOP_id RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*AP*GP*CP*G)- 3')
45 3diz 2.41 100.00 1.36 173 32 32 6 No_SCOP_id RNA (174-MER)
46 3dix 2.41 100.00 1.37 173 32 32 6 No_SCOP_id RNA (174-MER)
47 3dio 2.41 100.00 1.39 173 32 32 6 No_SCOP_id RNA (174-MER)
48 1nbs 2.41 96.88 1.41 270 32 31 8 No_SCOP_id RIBONUCLEASE P RNA
49 3dis 2.41 100.00 1.42 173 32 32 15 No_SCOP_id RNA (174-MER)
50 3nj6 2.39 80.00 0.80 10 32 8 2 No_SCOP_id 5'-R(*GP*GP*CP*AP*GP*CP*AP*GP*CP*C)-3'
51 422d 2.37 87.50 1.20 24 32 21 5 No_SCOP_id 5'-R(*GP*AP*UP*CP*AP*CP*UP*UP*CP*GP*GP*U)-3'
52 2r1s 2.37 100.00 1.21 24 32 24 6 No_SCOP_id RNA (5'-R(*GP*CP*GP*UP*UP*(5BU) P*GP*AP*AP*AP*CP*GP*C)-3')
53 1i9v 2.36 87.50 1.23 74 32 28 8 No_SCOP_id PHENYLALANINE TRANSFER RNA
54 4erj 2.36 96.88 1.31 161 32 31 8 No_SCOP_id LYSINE RIBOSWITCH RNA
55 1t0e 2.36 100.00 1.34 35 32 32 12 No_SCOP_id 5'- R(*GP*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*UP*CP*GP*G)- 3' & 5'- R(*CP*GP*AP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*CP*C)-3'
56 1wvd 2.36 96.88 1.43 46 32 31 5 No_SCOP_id 5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP *CP*AP*AP*G)-3'
57 3d0m 2.30 87.50 1.04 16 32 14 4 No_SCOP_id RNA (5'- R(*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3')
58 1zev 2.30 100.00 1.36 36 32 32 9 No_SCOP_id 5'-R(*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*G) -3'
59 3diy 2.30 100.00 1.40 172 32 32 6 No_SCOP_id RNA (174-MER)
60 3skl 2.30 90.62 1.40 128 32 29 13 No_SCOP_id RNA (66-MER)
61 3dig 2.30 100.00 1.42 173 32 32 15 No_SCOP_id RNA (174-MER)
62 3dj0 2.30 100.00 1.43 173 32 32 15 No_SCOP_id RNA (174-MER)
63 4erl 2.30 100.00 1.51 161 32 32 8 No_SCOP_id LYSINE RIBOSWITCH RNA
64 3d0u 2.30 100.00 1.58 161 32 32 8 No_SCOP_id LYSINE RIBOSWITCH RNA
65 1y6t 2.24 96.88 1.39 46 32 31 7 No_SCOP_id 5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP *CP*AP*AP*G)-3'
66 3dil 2.24 100.00 1.39 173 32 32 6 No_SCOP_id RNA (174-MER)
67 3dj2 2.24 100.00 1.39 173 32 32 6 No_SCOP_id RNA (174-MER)
68 3dhs 2.24 100.00 1.43 215 32 32 4 No_SCOP_id RNASE P RNA
69 3diq 2.24 100.00 1.44 173 32 32 6 No_SCOP_id RNA (174-MER)
70 1o3z 2.24 96.88 1.45 46 32 31 7 No_SCOP_id HIV-1 DIS(MAL) GENOMIC RNA
71 2fqn 2.24 96.88 1.46 43 32 31 10 No_SCOP_id 5'- R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP *UP*CP*GP*C)-3'
72 353d 2.22 100.00 1.48 24 32 24 5 No_SCOP_id RNA (5'-R(*AP*UP*CP*CP*CP*CP*CP*GP*UP*GP*CP*C)- 3') & RNA (5'-R(*GP*GP*UP*GP*CP*GP*GP*GP*GP*GP*AP*U)- 3')
73 4tna 2.18 81.25 1.21 62 32 26 8 No_SCOP_id TRNAPHE
74 3a3a 2.18 93.75 1.42 86 32 30 4 No_SCOP_id SELENOCYSTEINE TRNA
75 1zx7 2.18 100.00 1.43 116 32 32 11 No_SCOP_id 5'- R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G)-3' & 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)- 3'
76 2qus 2.18 93.75 1.49 136 32 30 8 No_SCOP_id HAMMERHEAD RIBOZYME
77 2oij 2.18 100.00 1.52 46 32 32 7 No_SCOP_id 5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP *CP*AP*AP*G)-3'
78 2o3v 2.18 96.88 1.61 43 32 31 6 No_SCOP_id RNA (5'- R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP *UP*CP*GP*C)-3')
79 3dir 2.18 100.00 1.62 172 32 32 7 No_SCOP_id RNA (174-MER)
80 2be0 2.18 100.00 1.82 42 32 32 7 No_SCOP_id 5'- R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP *CP*GP*C)-3'
81 2bee 2.18 100.00 1.82 42 32 32 7 No_SCOP_id 5'- R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP *CP*GP*C)-3'
82 1rna 2.17 100.00 1.52 28 32 28 2 No_SCOP_id RNA (5'- R(*UP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*A)-3')
83 3cgq 2.14 95.83 1.47 24 32 23 7 No_SCOP_id RNA (5'-R(*GP*CP*GP*CP*GP*(PSU) P*AP*GP*UP*AP*GP*C)-3') & RNA (5'- R(*CP*GP*CP*UP*AP*CP*UP*AP*AP*CP*GP*CP*G)-3')
84 1tra 2.12 81.25 1.20 62 32 26 8 No_SCOP_id TRNAPHE
85 3gm7 2.12 100.00 1.44 36 32 32 2 No_SCOP_id 5'-R(*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*G) -3'
86 1zci 2.12 90.62 1.53 88 32 29 10 No_SCOP_id 5'-R(*CP*(5BU) P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP* AP*G)-3'
87 1y6s 2.12 100.00 1.54 46 32 32 5 No_SCOP_id 5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP *CP*AP*AP*G)-3'
88 1mwl 2.12 96.88 1.65 42 32 31 7 No_SCOP_id 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP *UP*CP*GP*C)-3'
89 1d4r 2.12 96.88 1.74 81 32 31 6 No_SCOP_id 29-MER OF MODIFIED SRP RNA HELIX 6 & 29-MER OF MODIFIED SRP RNA HELIX 6
90 3sj2 2.07 93.75 1.35 36 32 30 13 No_SCOP_id RNA (5'- R(*UP*UP*GP*GP*GP*CP*CP*GP*GP*CP*GP*GP*CP*GP*GP*GP*UP*CP*C)-3') & RNA (5'- R(P*GP*GP*GP*CP*CP*GP*GP*CP*GP*GP*CP*GP*GP*GP*UP*CP*C)-3')
91 3cgp 2.07 95.83 1.46 24 32 23 6 No_SCOP_id RNA (5'-R(*GP*CP*GP*CP*GP*(PSU) P*AP*GP*UP*AP*GP*C)-3') & RNA (5'- R(*CP*GP*CP*UP*AP*CP*UP*AP*AP*CP*GP*CP*G)-3')
92 3far 2.07 100.00 1.48 46 32 32 7 No_SCOP_id RNA (5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP *CP*AP*AP*G)-3')
93 2quw 2.07 93.75 1.76 134 32 30 8 No_SCOP_id HAMMERHEAD RIBOZYME, CLEAVED FRAGMENT & HAMMERHEAD RIBOZYME, CLEAVED FRAGMENT
94 1i9x 2.05 96.15 1.53 26 32 25 4 No_SCOP_id 5'-R(*UP*AP*CP*UP*AP*AP*CP*GP*UP*AP*GP*UP*A)-3'
95 1j7t 2.01 96.88 1.69 42 32 31 6 No_SCOP_id 5'- R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP *CP*GP*C)-3'
96 413d 1.98 92.31 1.33 13 32 12 1 No_SCOP_id RNA (5'- R(*UP*GP*AP*GP*CP*UP*UP*CP*GP*GP*CP*UP*C)-3')
97 3l0u 1.95 90.62 1.45 73 32 29 11 No_SCOP_id UNMODIFIED TRNAPHE
98 1y90 1.95 93.75 1.51 44 32 30 5 No_SCOP_id 5'-R(*CP*(5BU) P*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP* AP*G)-3'
99 3s4p 1.95 96.88 1.65 42 32 31 7 No_SCOP_id RNA (5'- R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)- 3')
100 3slm 1.95 93.75 1.68 132 32 30 13 No_SCOP_id RNA (68-MER)
101 3cgr 1.91 95.83 1.45 24 32 23 11 No_SCOP_id RNA (5'-R(*GP*CP*GP*CP*GP*GP*(PSU) P*AP*GP*UP*GP*C)-3') & RNA (5'- R(*CP*GP*CP*AP*CP*UP*AP*AP*CP*CP*GP*CP*G)-3')
102 1yy0 1.89 87.50 1.20 45 32 28 8 No_SCOP_id 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)- 3' & 5'-R(*GP*CP*AP*GP*AP*(M5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)- 3'
103 3p59 1.89 87.50 1.45 94 32 28 11 No_SCOP_id RNA (5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*(5BU) P*G)-3') & RNA (5'-R(*CP*CP*GP*GP*CP*AP*GP*CP*CP*U)-3')
104 3q3z 1.89 84.38 1.48 148 32 27 4 No_SCOP_id C-DI-GMP-II RIBOSWITCH
105 2a2e 1.89 100.00 1.52 266 32 32 5 No_SCOP_id RNA SUBUNIT OF RNASE P
106 3sux 1.89 93.75 1.62 100 32 30 9 No_SCOP_id RIBOSWITCH
107 1h1k 1.89 100.00 1.68 1906 32 32 6 No_SCOP_id RNA & RNA & RNA & RNA & RNA & RNA
108 2oiy 1.89 100.00 1.73 46 32 32 6 No_SCOP_id 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP *GP*CP*AP*AP*G)-3'
109 4gpy 1.89 100.00 1.88 44 32 32 9 No_SCOP_id RNA (5'- R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP* C)-3')
110 2esj 1.89 100.00 1.98 42 32 32 11 No_SCOP_id 5'- R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP *CP*GP*C)-3'
111 1xpf 1.83 90.62 1.51 46 32 29 5 No_SCOP_id 5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP *CP*AP*AP*G)-3'
112 3jxq 1.83 95.00 1.53 20 32 19 7 No_SCOP_id R[CGCG(5-FLUORO)CG]2
113 1kfo 1.83 88.89 1.54 18 32 16 2 No_SCOP_id 5'- R(*GP*AP*AP*UP*GP*CP*CP*UP*GP*CP*GP*AP*GP*CP*AP*(5BU) P*CP*CP*C)-3'
114 2a64 1.83 96.88 1.55 298 32 31 10 No_SCOP_id RIBONUCLEASE P RNA
115 3jxr 1.83 86.67 1.56 15 32 13 3 No_SCOP_id R[CGCG(5-FLUORO)CG]2
116 1yrj 1.83 90.62 1.59 45 32 29 9 No_SCOP_id BACTERIAL 16 S RIBOSOMAL RNA A SITE OLIGONUCLEOTIDE
117 3sd3 1.83 96.88 1.62 89 32 31 7 No_SCOP_id TETRAHYDROFOLATE RIBOSWITCH
118 2o3x 1.83 96.88 1.81 42 32 31 7 No_SCOP_id RNA (5'- R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP *UP*CP*GP*C)-3')
119 2esi 1.83 96.88 1.93 44 32 31 9 No_SCOP_id 5'- R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP *UP*CP*GP*C)-3'
120 1sdr 1.78 75.00 1.05 48 32 24 4 No_SCOP_id RNA (5'-R(*UP*AP*AP*GP*GP*AP*GP*GP*UP*GP*AP*U)- 3') & RNA (5'-R(*AP*UP*CP*AP*CP*CP*UP*CP*CP*UP*UP*A)- 3')
121 1tn2 1.78 84.38 1.42 62 32 27 4 No_SCOP_id TRNAPHE
122 3td1 1.78 87.50 1.46 43 32 28 11 No_SCOP_id RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU) P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')
123 1fg0 1.78 90.62 1.55 498 32 29 4 No_SCOP_id 23S RIBOSOMAL RNA & 5'-R(CCGGCGGGCUGGUUCAAACCGGCCCGCCGGACC)-3'-5'- R(P-PUROMYCIN)-3'
124 1xp7 1.78 90.62 1.57 46 32 29 8 No_SCOP_id 5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP *CP*AP*AP*G)-3'
125 1k9w 1.78 93.75 1.64 92 32 30 7 No_SCOP_id HIV-1 DIS(MAL)UU RNA
126 3suy 1.78 93.75 1.67 100 32 30 10 No_SCOP_id RIBOSWITCH
127 1y95 1.78 100.00 1.71 46 32 32 5 No_SCOP_id 5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP *CP*AP*AP*G)-3'
128 2g5k 1.78 93.75 1.71 44 32 30 7 No_SCOP_id 5'- R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP *UP*CP*GP*C)-3'
129 1z43 1.78 96.88 1.75 101 32 31 7 No_SCOP_id RNA (101-MER)
130 2et4 1.78 96.88 1.82 42 32 31 7 No_SCOP_id 5'- R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP *CP*GP*C)-3'
131 462d 1.78 100.00 1.85 46 32 32 5 No_SCOP_id RNA (5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP *CP*AP*AP*G) -3')
132 3cjz 1.76 91.67 1.58 24 32 22 6 No_SCOP_id RNA (5'-R(*GP*GP*AP*CP*GP*(M2G) P*AP*CP*GP*UP*CP*CP*U)-3')
133 1fir 1.72 78.12 1.38 61 32 25 17 No_SCOP_id HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3)
134 1y99 1.72 96.88 1.62 46 32 31 8 No_SCOP_id 5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP *CP*AP*AP*G)-3'
135 2b8s 1.72 90.62 1.64 46 32 29 5 No_SCOP_id 5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP *CP*AP*AP*G)-3'
136 1xpe 1.72 90.62 1.66 46 32 29 4 No_SCOP_id 5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP *CP*AP*AP*G)-3'
137 2b8r 1.72 90.62 1.69 46 32 29 12 No_SCOP_id 5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP *CP*AP*AP*G)-3'
138 3td0 1.72 87.50 1.69 42 32 28 7 No_SCOP_id RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU) P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')
139 2et3 1.72 96.88 1.74 42 32 31 6 No_SCOP_id 5'- R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP *CP*GP*C)-3'
140 2et5 1.72 96.88 1.79 42 32 31 7 No_SCOP_id 5'- R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP *CP*GP*C)-3'
141 2o3y 1.72 96.88 1.82 43 32 31 9 No_SCOP_id RNA (5'- R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP *UP*CP*GP*C)-3')
142 1lc4 1.72 100.00 1.94 42 32 32 6 No_SCOP_id 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP *GP*UP*CP*GP*C)-3'
143 2nok 1.66 84.38 1.34 88 32 27 3 No_SCOP_id 5'- R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*CP*UP*UP*CP *AP*CP*GP*CP*C)-3' & 5'- R(*GP*CP*GP*UP*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*CP*UP*CP*CP*GP *G)-3'
144 1qcu 1.66 75.00 1.50 44 32 24 2 No_SCOP_id 5'-R(P*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*G)-3' & 5'-R(P*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*C)-3'
145 1yfg 1.66 81.25 1.50 64 32 26 4 No_SCOP_id YEAST INITIATOR TRNA
146 1y3o 1.66 87.50 1.57 44 32 28 8 No_SCOP_id 5'-R(*CP*UP*(5BU) P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP* G)-3'
147 1l8v 1.66 93.75 1.70 314 32 30 7 No_SCOP_id P4-P6 RNA RIBOZYME DOMAIN
148 2qek 1.66 100.00 1.76 46 32 32 9 No_SCOP_id HIV-1 SUBTYPE F DIS GENOMIC RNA
149 3b4a 1.66 96.88 1.77 143 32 31 10 No_SCOP_id GLMS RIBOZYME SUBSTRATE RNA & GLMS RIBOZYME RNA
150 2h0x 1.66 96.88 1.78 142 32 31 16 No_SCOP_id GLMS RIBOZYME AMINO RNA INHIBITOR & GLMS RIBOZYME RNA
151 2f4u 1.66 96.88 1.81 42 32 31 11 No_SCOP_id 5'- R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP *GP*C)-3'
152 3b4c 1.66 93.75 1.84 141 32 30 9 No_SCOP_id GLMS RIBOZYME SUBSTRATE WITH A 2'5'- PHOSPHODIESTER LINKAGE & GLMS RIBOZYME RNA
153 2et8 1.66 96.88 1.91 42 32 31 6 No_SCOP_id 5'- R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP *CP*GP*C)-3'
154 2oiu 1.66 100.00 2.02 142 32 32 9 No_SCOP_id L1 RIBOZYME RNA LIGASE
155 1dqh 1.64 100.00 1.97 19 32 19 6 No_SCOP_id RNA (5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3') & RNA (5'-R(*CP*AP*GP*GP*GP*UP*CP*GP*GP*C)-3')
156 1z79 1.60 87.50 1.50 45 32 28 7 No_SCOP_id RNA 5'-R(*GP*CP*AP*GP*AP*(A5M) P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'
157 6tna 1.60 84.38 1.53 62 32 27 6 No_SCOP_id TRNAPHE
158 1y3s 1.60 87.50 1.55 44 32 28 5 No_SCOP_id 5'-R(*CP*UP*(5BU) P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP* G)-3'
159 2fd0 1.60 87.50 1.60 44 32 28 3 No_SCOP_id HIV-1 DIS RNA
160 4j50 1.60 90.62 1.64 38 32 29 9 No_SCOP_id RNA (5'- R(*UP*UP*GP*GP*GP*CP*CP*AP*GP*CP*AP*GP*CP*AP*GP*GP*UP*CP*C)-3')
161 3bwp 1.60 90.62 1.66 356 32 29 5 No_SCOP_id GROUP IIC INTRON
162 3rg5 1.60 93.75 1.69 172 32 30 15 No_SCOP_id TRNA(SEC)
163 3b4b 1.60 96.88 1.77 143 32 31 9 No_SCOP_id GLMS RIBOZYME SUBSTRATE WITH 2'5'-PHOSPHODIESTER LINKAGE & GLMS RIBOZYME RNA
164 2ho6 1.60 96.88 1.80 142 32 31 16 No_SCOP_id GLMS RIBOZYME SUBSTRATE RNA & GLMS RIBOZYME RNA
165 2h0w 1.60 96.88 1.84 142 32 31 16 No_SCOP_id GLMS RIBOZYME PRODUCT OLIGONUCLEOTIDE & GLMS RIBOZYME RNA
166 1gid 1.60 96.88 1.85 316 32 31 6 No_SCOP_id P4-P6 RNA RIBOZYME DOMAIN
167 2f4s 1.60 96.88 1.86 42 32 31 6 No_SCOP_id 5'- R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*C P*GP*C)-3'
168 4e8q 1.60 93.75 1.86 392 32 30 5 No_SCOP_id GROUP IIC INTRON
169 4e8v 1.60 96.88 1.87 388 32 31 9 No_SCOP_id GROUP IIC INTRON
170 2h1m 1.59 93.33 1.51 30 32 28 9 No_SCOP_id 5'-R(*GP*CP*AP*(XUG)P*AP*GP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)- 3'
171 1yxp 1.54 87.50 1.55 44 32 28 5 No_SCOP_id 5'-R(*CP*UP*(5BU) P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP* G)-3'
172 3syw 1.54 93.75 1.72 38 32 30 4 No_SCOP_id RNA (5'- R(*UP*UP*GP*GP*GP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*CP*C)-3')
173 2oe8 1.54 93.75 1.75 33 32 30 6 No_SCOP_id RNA (5'-R(*GP*GP*GP*CP*GP*UP*CP*GP*CP*UP*AP*GP*UP*AP*CP*C)- 3') & RNA (5'- R(*CP*GP*GP*UP*AP*CP*UP*AP*AP*AP*AP*GP*UP*CP*GP*CP*C)-3')
174 2gcs 1.54 96.88 1.80 142 32 31 7 No_SCOP_id GLMS RIBOZYME AMINO RNA INHIBITOR & GLMS RIBOZYME RNA
175 4tra 1.54 84.38 1.80 62 32 27 9 No_SCOP_id TRNAPHE
176 2pwt 1.54 100.00 1.95 42 32 32 8 No_SCOP_id 22-MER OF THE RIBOSOMAL DECODING SITE
177 1dqf 1.54 100.00 1.85 19 32 19 8 No_SCOP_id RNA (5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3') & RNA (5'-R(*CP*AP*GP*GP*GP*UP*CP*GP*GP*C)-3')
178 1csl 1.50 85.71 1.55 28 32 24 3 No_SCOP_id 5'-R(*AP*AP*CP*GP*GP*GP*CP*GP*CP*AP*GP*AP*A)-3' & 5'-R(*UP*CP*UP*GP*AP*CP*GP*GP*UP*AP*CP*GP*UP*UP*U)-3'
179 2zy6 1.49 75.00 1.48 38 32 24 6 No_SCOP_id PHENYLALANYL TRANSFER RNA
180 2fcz 1.49 90.62 1.60 88 32 29 8 No_SCOP_id HIV-1 DIS RNA
181 3skw 1.49 90.62 1.66 128 32 29 4 No_SCOP_id RNA (66-MER)
182 1y27 1.49 81.25 1.67 67 32 26 7 No_SCOP_id BACILLUS SUBTILIS XPT
183 1hr2 1.49 93.75 1.75 315 32 30 7 No_SCOP_id P4-P6 DELC209 MUTANT RNA RIBOZYME DOMAIN
184 2oe6 1.49 93.75 1.77 33 32 30 8 No_SCOP_id RNA (5'-R(*GP*GP*GP*CP*GP*UP*CP*GP*CP*UP*AP*GP*UP*AP*CP*C)- 3') & RNA (5'- R(*CP*GP*GP*UP*AP*CP*UP*AP*AP*AP*AP*GP*UP*CP*GP*CP*C)-3')
185 4gpw 1.49 93.75 1.79 44 32 30 8 No_SCOP_id RNA (5'- R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP* C)-3')
186 4jrc 1.49 93.75 1.80 112 32 30 12 No_SCOP_id DISTAL STEM I REGION OF THE GLYQS T BOX LEADER RNA
187 2gcv 1.49 96.88 1.85 142 32 31 16 No_SCOP_id GLMS RIBOZYME PRODUCT OLIGONUCLEOTIDE & GLMS RIBOZYME RNA
188 4gpx 1.49 96.88 1.85 42 32 31 9 No_SCOP_id RNA (5'- R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP* C)-3')
189 1y26 1.49 84.38 1.86 71 32 27 8 No_SCOP_id VIBRIO VULNIFICUS A-RIBOSWITCH
190 2oe5 1.49 96.88 1.86 33 32 31 9 No_SCOP_id RNA (5'-R(*GP*GP*CP*GP*UP*CP*GP*CP*UP*AP*GP*UP*AP*CP*CP*G)- 3') & RNA (5'- R(*GP*GP*UP*AP*CP*UP*AP*AP*AP*AP*GP*UP*CP*GP*CP*CP*C)-3')
191 3bnl 1.49 90.62 1.88 44 32 29 6 No_SCOP_id A SITE OF BACTERIAL RIBOSOME
192 3skt 1.49 93.75 1.88 128 32 30 3 No_SCOP_id RNA (66-MER)
193 3mja 1.49 96.88 1.94 43 32 31 2 No_SCOP_id DOMAIN 3 OF THE CRICKET PARALYSIS VIRUS INTERGENIC REGION IRES RNA & RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3')
194 1mdg 1.46 60.00 0.23 5 32 3 2 No_SCOP_id 5'-R(*UP*(BGM)GP*AP*GP*GP*U)-3'
195 2d2k 1.43 78.12 1.48 60 32 25 8 No_SCOP_id 5'-R(*UP*CP*CP*CP*(A2M)P*GP*UP*CP*CP*AP*CP*CP*G)-3' & 5'-R(*CP*GP*GP*UP*GP*AP*GP*AP*AP*GP*GP*G)-3' & 5'-R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)- 3' & 5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*UP*AP*UP*UP*AP*CP*CP*UP*GP*CP *C)-3'
196 1x9c 1.43 78.12 1.53 60 32 25 8 No_SCOP_id 5'-R(*UP*CP*CP*CP*(A2M)P*GP*UP*CP*CP*AP*CP*CP*G)-3' & 5'-R(*CP*GP*GP*UP*GP*AP*GP*AP*AP*GP*GP*G)-3' & 5'-R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)- 3' & 5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP *C)-3'
197 3got 1.43 78.12 1.55 67 32 25 7 No_SCOP_id GUANINE RIBOSWITCH
198 3oxj 1.43 84.38 1.73 171 32 27 5 No_SCOP_id DOMAIN II OF GLYCINE RIBOSWITCH
199 4gma 1.43 87.50 1.76 192 32 28 5 No_SCOP_id ADENOSYLCOBALAMIN RIBOSWITCH
200 406d 1.43 84.38 1.77 32 32 27 10 No_SCOP_id RNA (5'-R(*CP*AP*CP*CP*GP*GP*AP*UP*GP*GP*UP*(5BU) P*CP*GP*GP*UP*G)-3')
201 4faq 1.43 93.75 1.80 395 32 30 6 No_SCOP_id GROUP IIC INTRON
202 3gx3 1.43 90.62 1.81 94 32 29 9 No_SCOP_id RNA (94-MER)
203 3skr 1.43 93.75 1.81 128 32 30 6 No_SCOP_id RNA (66-MER)
204 3slq 1.43 93.75 1.84 132 32 30 2 No_SCOP_id RNA (68-MER)
205 3gx2 1.43 90.62 1.85 94 32 29 9 No_SCOP_id RNA (94-MER)
206 3t4b 1.43 96.88 1.88 83 32 31 5 No_SCOP_id HCV IRES PSEUDOKNOT DOMAIN PLUS CRYSTALLIZATION MODULE
207 1nlc 1.43 100.00 1.95 46 32 32 8 No_SCOP_id HIV-1 DIS(MAL) GENOMIC RNA
208 3c44 1.43 96.88 2.06 46 32 31 9 No_SCOP_id HIV-1 SUBTYPE F GENOMIC RNA
209 2f4t 1.43 100.00 2.09 44 32 32 6 No_SCOP_id 5'- R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP *GP*C)-3' & 5'- R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP *UP*CP*GP*C)-3'
210 3bns 1.37 81.25 1.70 85 32 26 11 No_SCOP_id A SITE OF HUMAN MITOCHONDRIAL RIBOSOME, CHAIN THREE & A SITE OF HUMAN MITOCHONDRIAL RIBOSOME, CHAIN TWO & A SITE OF HUMAN MITOCHONDRIAL RIBOSOME, CHAIN THREE
211 3gx6 1.37 90.62 1.80 94 32 29 9 No_SCOP_id RNA (94-MER)
212 2ho7 1.37 96.88 1.81 143 32 31 10 No_SCOP_id GLMS RIBOZYME SUBSTRATE RNA & GLMS RIBOZYME RNA
213 4e8n 1.37 93.75 1.81 392 32 30 6 No_SCOP_id GROUP IIC INTRON
214 3owz 1.37 84.38 1.89 168 32 27 6 No_SCOP_id DOMAIN II OF GLYCINE RIBOSWITCH & DOMAIN II OF GLYCINE RIBOSWITCH
215 3eoh 1.37 93.75 1.91 386 32 30 8 No_SCOP_id GROUP IIC INTRON & 5'-R(*UP*UP*AP*UP*UP*A)-3'
216 4f8v 1.37 96.88 1.91 42 32 31 8 No_SCOP_id RNA (5'- R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)- 3')
217 4far 1.37 96.88 1.91 394 32 31 5 No_SCOP_id GRUUP IIC INTRON & GROUP IIC INTRON
218 2o3w 1.37 96.88 1.93 43 32 31 9 No_SCOP_id RNA (5'- R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP *UP*CP*GP*C)-3')
219 3mj3 1.37 96.88 1.96 43 32 31 5 No_SCOP_id DOMAIN 3 OF THE CRICKET PARALYSIS VIRUS INTERGENIC REGION IRES RNA & RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3')
220 3suh 1.37 96.88 1.97 100 32 31 5 No_SCOP_id RIBOSWITCH
221 3loa 1.37 84.38 1.99 42 32 27 6 No_SCOP_id 5'-R(*CP*CP*GP*CP*GP*CP*CP*CP*GP*(5BU) P*CP*AP*CP*AP*CP*CP*AP*CP*CP*CP*G)-3' & 5'-R(*GP*GP*GP*(5BU) P*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*UP*AP*AP*CP*GP*CP*GP*GP*C)-3'
222 1duq 1.37 100.00 2.08 104 32 32 8 No_SCOP_id THE REV BINDING ELEMENT & THE REV BINDING ELEMENT
223 2eeu 1.31 78.12 1.46 67 32 25 6 No_SCOP_id GUANINE RIBOSWITCH
224 2bcz 1.31 78.12 1.57 61 32 25 7 No_SCOP_id 5'-R(*UP*CP*CP*CP*(DA)P*GP*UP*CP*CP*AP*CP*CP*G)- 3') & 5'-R(*CP*GP*GP*UP*GP*AP*IP*AP*AP*GP*GP*G)-3' & 5'- R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3' & 5'- R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C) -3'
225 3b5s 1.31 78.12 1.59 59 32 25 4 No_SCOP_id LOOP A SUBSTRATE STRAND & 29-MER LOOP A AND LOOP B RIBOZYME STRAND & LOOP B S-TURN STRAND
226 3oxd 1.31 81.25 1.67 172 32 26 5 No_SCOP_id DOMAIN II OF GLYCINE RIBOSWITCH & DOMAIN II OF GLYCINE RIBOSWITCH
227 2fcx 1.31 87.50 1.69 44 32 28 5 No_SCOP_id HIV-1 DIS RNA
228 3dvv 1.31 93.75 1.70 44 32 30 8 No_SCOP_id HIV-1 GENOMIC RNA
229 4en5 1.31 81.25 1.71 52 32 26 3 No_SCOP_id FLUORIDE RIBOSWITCH
230 2eev 1.31 81.25 1.77 67 32 26 7 No_SCOP_id GUANINE RIBOSWITCH
231 1zz5 1.31 90.62 1.86 58 32 29 7 No_SCOP_id 5'- R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G)-3' & 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)- 3'
232 3bnr 1.31 84.38 1.86 85 32 27 7 No_SCOP_id A SITE OF HUMAN MITOCHONDRIAL RIBOSOME, CHAIN ONE & A SITE OF HUMAN MITOCHONDRIAL RIBOSOME, CHAIN TWO & A SITE OF HUMAN MITOCHONDRIAL RIBOSOME, CHAIN THREE
233 3eog 1.31 93.75 1.86 393 32 30 10 No_SCOP_id GROUP IIC INTRON & 5'-R(*UP*UP*AP*UP*UP*A)-3'
234 4f8u 1.31 93.75 1.87 43 32 30 8 No_SCOP_id RNA (5'- R(P*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C) -3') & RNA (5'- R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)- 3')
235 3r4f 1.31 84.38 1.89 66 32 27 3 No_SCOP_id PRNA
236 1o9m 1.31 96.88 1.96 42 32 31 8 No_SCOP_id EUBACTERIAL A-SITE
237 2oj0 1.31 100.00 2.00 46 32 32 13 No_SCOP_id 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP *GP*CP*AP*AP*G)-3'
238 480d 1.29 74.07 1.55 27 32 20 3 No_SCOP_id SARCIN/RICIN DOMAIN FROM 23 S RRNA
239 1f27 1.28 80.00 1.56 30 32 24 6 No_SCOP_id RNA (5'- R(*AP*CP*CP*GP*UP*CP*AP*GP*AP*GP*GP*AP*CP*AP*CP*GP*GP*UP*U) -3') & RNA (5'-R(*AP*AP*AP*AP*AP*GP*UP*CP*CP*UP*C)-3')
240 2q1o 1.26 68.75 1.11 44 32 22 7 No_SCOP_id RNA (5'-R(*CP*GP*CP*(NF2) P*AP*AP*UP*UP*GP*GP*CP*G)-3')
241 2pn3 1.26 75.00 1.34 42 32 24 3 No_SCOP_id 5'- R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*CP*UP*UP*CP *AP*CP*GP*CP*C)-3' & 5'-R(*GP*CP*GP*(5BU) P*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*CP*(5BU)P*CP*CP*GP*G)-3'
242 2pn4 1.26 78.12 1.43 84 32 25 13 No_SCOP_id 5'-R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*CP*UP*UP *CP*AP*CP*GP*CP*C)-3' & 5'-R(*GP*CP*GP*(5BU) P*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*CP*(5BU)P*CP*CP*GP*G)-3'
243 1zfx 1.26 75.00 1.48 61 32 24 7 No_SCOP_id 5'-R(*UP*CP*CP*CP*AP*GP*UP*CP*CP*AP*CP*CP*G)-3' & 5'-R(*CP*GP*GP*UP*GP*AP*UP*AP*AP*GP*GP*G)-3' & 5'- R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3' & 5'- R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C) -3'
244 2oue 1.26 78.12 1.54 60 32 25 8 No_SCOP_id SUBSTRATE STRAND - MINIMAL JUNCTIONLESS HAIRPIN RIBOZYME & LOOP A RIBOZYME STRAND & LOOP B RIBOZYME STRAND & LOOP B S-TURN STRAND
245 2d2l 1.26 78.12 1.60 59 32 25 3 No_SCOP_id 5'-R(*UP*CP*CP*CP*(A2M)P*GP*UP*CP*CP*AP*CP*CP*G)-3' & 5'-R(*CP*GP*GP*UP*GP*AP*GP*AP*AP*GP*GP*G)-3' & 5'-R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)- 3' & 5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*(P1P) P*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3'
246 3npq 1.26 78.12 1.62 150 32 25 6 No_SCOP_id S-ADENOSYLHOMOCYSTEINE RIBOSWITCH
247 3b5a 1.26 78.12 1.65 60 32 25 4 No_SCOP_id LOOP A SUBSTRATE STRAND & 29-MER LOOP A AND LOOP B RIBOZYME STRAND & LOOP B S-TURN STRAND
248 3bbm 1.26 78.12 1.66 60 32 25 4 No_SCOP_id LOOP A SUBSTRATE STRAND & LOOP A AND LOOP B RIBOZYME STRAND & LOOP B S-TURN STRAND
249 1zfv 1.26 78.12 1.67 61 32 25 4 No_SCOP_id 5'-R(*UP*CP*CP*CP*AP*GP*UP*CP*CP*AP*CP*CP*G)-3' & 5'-R(*CP*GP*GP*UP*GP*AP*AP*AP*AP*GP*GP*G)-3' & 5'- R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3' & 5'- R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C) -3'
250 1yzd 1.26 87.50 1.68 45 32 28 9 No_SCOP_id RNA 5'-R(*GP*CP*AP*GP*AP*(A5M) P*UP*UP*AP*AP*GP*UP*CP*UP*GP*C)-3'
251 4frg 1.26 84.38 1.68 168 32 27 10 No_SCOP_id COBALAMIN RIBOSWITCH APTAMER DOMAIN
252 3rkf 1.26 84.38 1.83 268 32 27 7 No_SCOP_id GUANINE RIBOSWITCH
253 2xnz 1.26 81.25 1.84 65 32 26 6 No_SCOP_id GUANINE RIBOSWITCH
254 3fo4 1.26 81.25 1.84 63 32 26 7 No_SCOP_id GUANINE RIBOSWITCH C74U MUTANT
255 3mei 1.26 90.62 1.86 44 32 29 11 No_SCOP_id RNA (5'-R(*CP*CP*GP*CP*CP*GP*CP*GP*CP*CP*AP*(5BU) P*GP*CP*CP*UP*GP*UP*GP*GP*CP*GP*G)-3')
256 4faw 1.26 90.62 1.86 395 32 29 8 No_SCOP_id GROUP IIC INTRON & 5'-R(*A*UP*UP*UP*AP*UP*UP*A)-3'
257 4ds6 1.26 93.75 1.87 393 32 30 6 No_SCOP_id MUTANT GROUP IIC INTRON
258 3la5 1.26 84.38 1.90 71 32 27 4 No_SCOP_id ADENOSINE RIBOSWITCH
259 4e8k 1.26 90.62 1.91 394 32 29 11 No_SCOP_id GROUP IIC INTRON & 5'-R(*CP*G*AP*UP*UP*UP*AP*UP*UP*A)-3'
260 4e8p 1.26 90.62 1.92 392 32 29 9 No_SCOP_id GROUP IIC INTRON
261 3ski 1.26 96.88 1.93 133 32 31 6 No_SCOP_id RNA (68-MER) & RNA (68-MER)
262 4fau 1.26 96.88 1.94 392 32 31 5 No_SCOP_id GROUP IIC INTRON
263 3mjb 1.26 90.62 1.97 43 32 29 9 No_SCOP_id DOMAIN 3 OF THE CRICKET PARALYSIS VIRUS INTERGENIC REGION IRES RNA & RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3')
264 4e8r 1.26 96.88 2.00 392 32 31 6 No_SCOP_id GROUP IIC INTRON
265 3cgs 1.22 100.00 2.04 24 32 24 9 No_SCOP_id RNA (5'-R(*GP*CP*GP*CP*GP*(PSU) P*AP*GP*UP*AP*GP*C)-3') & RNA (5'- R(*CP*GP*CP*UP*AP*CP*UP*GP*AP*CP*GP*CP*G)-3')
266 2ao5 1.20 56.25 0.66 36 32 18 5 No_SCOP_id 5'-R(*GP*GP*CP*GP*(5BU)P*GP*CP*GP*CP*U)-3'
267 3b58 1.20 78.12 1.63 61 32 25 5 No_SCOP_id LOOP A SUBSTRATE STRAND & 29-MER LOOP A AND LOOP B RIBOZYME STRAND & LOOP B S-TURN STRAND
268 3g4m 1.20 81.25 1.67 67 32 26 7 No_SCOP_id GUANINE RIBOSWITCH
269 3npn 1.20 78.12 1.71 50 32 25 10 No_SCOP_id S-ADENOSYLHOMOCYSTEINE RIBOSWITCH
270 3vrs 1.20 81.25 1.76 52 32 26 3 No_SCOP_id FLUORIDE RIBOSWITCH
271 3bbi 1.20 81.25 1.82 59 32 26 8 No_SCOP_id LOOP A SUBSTRATE STRAND & LOOP A AND LOOP B RIBOZYME STRAND & LOOP B S-TURN STRAND
272 1kxk 1.20 93.75 1.87 70 32 30 6 No_SCOP_id AI5G GROUP II SELF-SPLICING INTRON
273 1x8w 1.20 93.75 1.88 968 32 30 13 No_SCOP_id TETRAHYMENA RIBOZYME RNA
274 3skz 1.20 96.88 1.96 132 32 31 2 No_SCOP_id RNA (68-MER)
275 1fuf 1.19 84.62 1.86 26 32 22 4 No_SCOP_id (5'-R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(CBR) P*C)-3')
276 3dvz 1.15 74.07 1.68 27 32 20 5 No_SCOP_id SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA
277 1q9a 1.15 77.78 1.85 27 32 21 5 No_SCOP_id SARCIN/RICIN 23S RRNA
278 1kh6 1.14 59.38 0.96 42 32 19 9 No_SCOP_id JIIIABC
279 280d 1.14 75.00 1.40 48 32 24 5 No_SCOP_id RNA (5'-R(*GP*GP*CP*GP*CP*UP*UP*GP*CP*GP*UP*C)- 3')
280 364d 1.14 71.88 1.45 59 32 23 10 No_SCOP_id RNA (5'-R(*UP*GP*)-D(*(1SC)P*)- R(*CP*UP*GP*GP*CP*GP*GP*C)-3') & RNA (5'- R(*CP*CP*GP*AP*UP*GP*GP*UP*AP*GP*UP*GP*UP*GP*GP*GP*G *UP*C)-3') & RNA (5'- R(*CP*CP*CP*CP*AP*UP*GP*CP*GP*AP*GP*AP*GP*UP*AP*GP*G P*GP*AP*AP*CP*UP*GP*CP*CP*AP*GP*GP*CP*AP*U)-3')
281 2bcy 1.14 75.00 1.57 60 32 24 6 No_SCOP_id 5'-R(*UP*CP*CP*CP*AP*GP*UP*CP*CP*AP*CP*CP*G)-3' & 5'-R(*CP*GP*GP*UP*GP*AP*(MTU)P*AP*AP*GP*GP*G)-3' & 5'- R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3' & 5'- R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C) -3'
282 2fgp 1.14 75.00 1.59 60 32 24 5 No_SCOP_id 5'-R(*UP*CP*CP*CP*AP*GP*UP*CP*CP*AP*CP*CP*G)-3' & 5'-R(*CP*GP*GP*UP*GP*AP*(N6G)P*AP*AP*GP*GP*G)-3' & 5'- R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3' & 5'- R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C) -3'
283 2hoj 1.14 78.12 1.62 78 32 25 5 No_SCOP_id THI-BOX RIBOSWITCH
284 3b91 1.14 78.12 1.67 60 32 25 4 No_SCOP_id LOOP A SUBSTRATE STRAND & 29-MER LOOP A AND LOOP B RIBOZYME STRAND & LOOP B S-TURN STRAND
285 2npz 1.14 75.00 1.68 61 32 24 10 No_SCOP_id 5'-R(*UP*CP*CP*CP*AP*GP*UP*CP*CP*AP*CP*CP*G)-3' & 5'-R(*CP*GP*GP*UP*GP*AP*GP*AP*AP*GP*GP*G)-3' & 5'- R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3' & 5'- R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C) -3'
286 2hol 1.14 78.12 1.71 79 32 25 11 No_SCOP_id THI-BOX RIBOSWITCH
287 2hom 1.14 78.12 1.71 80 32 25 11 No_SCOP_id THI-BOX RIBOSWITCH
288 2fcy 1.14 87.50 1.75 44 32 28 10 No_SCOP_id HIV-1 DIS RNA
289 2eet 1.14 81.25 1.76 67 32 26 6 No_SCOP_id GUANINE RIBOSWITCH
290 4fe5 1.14 81.25 1.78 67 32 26 7 No_SCOP_id XPT-PBUX GUANINE RIBOSWITCH APTAMER DOMAIN
291 3gx5 1.14 87.50 1.79 94 32 28 6 No_SCOP_id RNA (94-MER)
292 4fej 1.14 78.12 1.80 67 32 25 7 No_SCOP_id A24U MUTANT OF THE B. SUBTILIS XPT-PBUX GUANINE RIBOSWITCH APTAMER DOMAIN
293 2ees 1.14 81.25 1.81 67 32 26 7 No_SCOP_id GUANINE RIBOSWITCH
294 3b5f 1.14 81.25 1.84 60 32 26 8 No_SCOP_id LOOP A SUBSTRATE STRAND & 29-MER LOOP A AND LOOP B RIBOZYME STRAND & LOOP B S-TURN STRAND
295 3gog 1.14 81.25 1.87 65 32 26 6 No_SCOP_id GUANINE RIBOSWITCH
296 3ds7 1.14 84.38 1.89 134 32 27 8 No_SCOP_id 67-MER
297 4g6p 1.14 81.25 1.92 59 32 26 9 No_SCOP_id LOOP A SUBSTRATE STRAND & LOOP A AND LOOP B RIBOZYME STRAND & LOOP B OF THE RIBOZYME STRAND
298 2qbz 1.14 90.62 1.95 153 32 29 9 No_SCOP_id M-BOX RNA, YKOK RIBOSWITCH APTAMER
299 3bbk 1.14 84.38 1.99 61 32 27 10 No_SCOP_id LOOP A SUBSTRATE STRAND & LOOP A AND LOOP B RIBOZYME STRAND & LOOP B S-TURN STRAND
300 4e8m 1.14 96.88 2.00 394 32 31 10 No_SCOP_id GROUP IIC INTRON
301 3oxe 1.14 84.38 2.04 173 32 27 5 No_SCOP_id DOMAIN II OF GLYCINE RIBOSWITCH & DOMAIN II OF GLYCINE RIBOSWITCH
302 3fs0 1.13 100.00 2.16 21 32 21 7 No_SCOP_id 5'-R(*GP*GP*UP*GP*AP*GP*GP*CP*UP*G)-3' & 5'-R(*CP*CP*AP*GP*UP*CP*GP*GP*AP*AP*C)-3'
303 1mhk 1.12 65.38 1.39 26 32 17 4 No_SCOP_id RNA 12-MER BCH12 & RNA 14-MER BCH12
304 2npy 1.08 78.12 1.59 60 32 25 8 No_SCOP_id 5'-R(*UP*CP*CP*CP*(U2N)P*GP*UP*CP*CP*AP*CP*CP*G)-3' & 5'-R(*CP*GP*GP*UP*GP*AP*GP*AP*AP*GP*GP*G)-3' & 5'-R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)- 3' & 5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP *C)-3'
305 3gs8 1.08 78.12 1.65 61 32 25 7 No_SCOP_id RNA (5'- R(*UP*CP*CP*CP*AP*GP*UP*CP*CP*AP*CP*CP*GP*U)-3') & RNA (5'-R(*CP*GP*GP*UP*GP*AP*GP*AP*AP*GP*GP*G)- 3') & RNA (5'- R(P*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3') & RNA (5'- R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C) -3')
306 3tzr 1.08 78.12 1.66 36 32 25 8 No_SCOP_id 5'-R(*CP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*CP*UP*UP*CP *CP*C)-3' & 5'-R(*GP*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*CP*UP*CP*GP*G)-3'
307 4fnj 1.08 78.12 1.68 35 32 25 9 No_SCOP_id RNA (35-MER)
308 1evv 1.08 84.38 1.69 62 32 27 10 No_SCOP_id PHENYLALANINE TRANSFER RNA
309 4ena 1.08 78.12 1.69 51 32 25 4 No_SCOP_id FLUORIDE RIBOSWITCH
310 4g6r 1.08 78.12 1.84 60 32 25 7 No_SCOP_id LOOP A SUBSTRATE STRAND & LOOP A RIBOZYME STRAND & LOOP B RIBOZYME STRAND & LOOP B S-TURN STRAND
311 2eew 1.08 81.25 1.85 67 32 26 7 No_SCOP_id GUANINE RIBOSWITCH
312 4enc 1.08 81.25 1.85 52 32 26 4 No_SCOP_id FLUORIDE RIBOSWITCH
313 2ydh 1.08 90.62 1.90 94 32 29 7 No_SCOP_id SAM-I RIBOSWITCH
314 2p7f 1.08 81.25 1.91 60 32 26 5 No_SCOP_id SUBSTRATE STRAND & LOOP A RIBOZYME STRAND & LOOP B RIBOZYME STRAND & LOOP B S-TURN STRAND
315 2g9c 1.08 81.25 1.92 67 32 26 3 No_SCOP_id GUANINE RIBOSWITCH
316 2tra 1.08 84.38 1.92 65 32 27 4 No_SCOP_id TRNAASP
317 1ehz 1.08 87.50 1.93 62 32 28 10 No_SCOP_id TRANSFER RNA (PHE)
318 3fo6 1.08 81.25 1.94 67 32 26 7 No_SCOP_id GUANINE RIBOSWITCH
319 3ges 1.08 81.25 1.96 67 32 26 6 No_SCOP_id GUANINE RIBOSWITCH
320 4fax 1.08 93.75 1.96 391 32 30 7 No_SCOP_id GROUP IIC INTRON
321 2yif 1.08 90.62 1.97 108 32 29 9 No_SCOP_id FMN RIBOSWITCH & FMN RIBOSWITCH
322 3igi 1.08 93.75 1.98 396 32 30 8 No_SCOP_id GROUP IIC INTRON & 5'-R(*CP*GP*CP*UP*CP*UP*AP*CP*UP*CP*UP*AP*U)-3'
323 1lnt 1.08 90.91 1.89 22 32 20 2 No_SCOP_id 5'-R(*GP*CP*GP*UP*CP*AP*GP*GP*UP*CP*(CBV)P*G)-3' & 5'-R(*CP*GP*GP*AP*AP*GP*CP*AP*GP*(CBV)P*GP*C)-3'
324 464d 1.05 65.38 1.69 26 32 17 4 No_SCOP_id RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3') & RNA (5'-R(*GP*GP*GP*GP*CP*(IU)P*A)-3')
325 3s8u 1.05 73.08 1.73 26 32 19 7 No_SCOP_id ECOLI 23 S RRNA SARCIN RICIN LOOP
326 3dw7 1.05 80.77 2.00 26 32 21 3 No_SCOP_id SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA
327 3dw5 1.05 80.77 2.01 26 32 21 3 No_SCOP_id SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA
328 1l3z 1.04 64.29 1.22 14 32 9 1 No_SCOP_id 5'-R(*GP*UP*AP*UP*AP*CP*A)-3'
329 3gs1 1.02 75.00 1.65 61 32 24 3 No_SCOP_id RNA (5'- R(*UP*CP*CP*CP*AP*GP*UP*CP*CP*AP*CP*CP*GP*U)-3') & RNA (5'-R(*CP*GP*GP*UP*GP*AP*GP*AP*AP*GP*GP*G)- 3') & RNA (5'- R(P*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3') & RNA (5'- R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C) -3')
330 1zft 1.02 78.12 1.74 60 32 25 3 No_SCOP_id 5'-R(*UP*CP*CP*CP*(A2M)P*GP*UP*CP*CP*AP*CP*CP*G)-3' & 5'-R(*CP*GP*GP*UP*GP*AP*IP*AP*AP*GP*GP*G)-3' & 5'-R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)- 3' & 5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP *C)-3'
331 2oeu 1.02 78.12 1.77 60 32 25 4 No_SCOP_id HAMMERHEAD RIBOZYME & 5'-R(*GP*GP*CP*GP*UP*(OMC)P*CP*UP*GP*GP*(5BU) P*AP*UP*CP*CP*AP*AP*UP*CP*(DC))-3'
332 3f30 1.02 84.38 1.78 107 32 27 0 No_SCOP_id FMN RIBOSWITCH
333 3ger 1.02 81.25 1.85 67 32 26 4 No_SCOP_id GUANINE RIBOSWITCH
334 1ykq 1.02 81.25 1.86 98 32 26 4 No_SCOP_id DIELS-ALDER RIBOZYME & DIELS-ALDER RIBOZYME
335 3tra 1.02 84.38 1.92 64 32 27 4 No_SCOP_id TRNAASP
336 486d 1.02 84.38 1.92 195 32 27 4 No_SCOP_id P-SITE TRNA OF 70S RIBOSOME & P-SITE CODON OF 70S RIBOSOME & A-SITE TRNA OF 70S RIBOSOME & A-SITE CODON OF 70S RIBOSOME & E-SITE TRNA OF 70S RIBOSOME & PENULTIMATE STEM OF 16S RRNA IN THE 70S RIBOSOME & 900 STEM-LOOP OF 16S RRNA IN THE 70S RIBOSOME
337 3bnn 1.02 81.25 2.04 84 32 26 8 No_SCOP_id A SITE OF HUMAN RIBOSOME
338 1vtq 1.02 87.50 2.09 67 32 28 13 No_SCOP_id TRNAASP
339 4feo 1.02 84.38 2.14 67 32 27 11 No_SCOP_id U25A/A46G/C74U MUTANT OF THE B. SUBTILIS XPT-PBUX GUANINE RIBOSWITCH APTAMER DOMAIN
340 1kd4 0.99 86.36 1.91 22 32 19 4 No_SCOP_id 5'-R(*GP*GP*UP*CP*AP*CP*AP*GP*CP*CP*C)-3'
341 3dw4 0.98 73.08 1.73 26 32 19 8 No_SCOP_id SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA
342 1ik5 0.98 84.62 1.92 26 32 22 4 No_SCOP_id 5'-R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(CBR) P*C)-3' & 5'-R(*GP*GP*UP*AP*UP*UP*UP*UP*GP*GP*UP*AP*(CBR) P*C)-3'
343 2val 0.97 53.57 0.77 28 32 15 6 No_SCOP_id 5'-R(*GP*CP*GP*GP*GP*AP*AP)-3' & 5'-R(*UP*UP*CP*CP*CP*GP*CP)-3'
344 2b57 0.97 81.25 1.83 65 32 26 4 No_SCOP_id 65-MER
345 3gao 0.97 81.25 1.83 67 32 26 4 No_SCOP_id GUANINE RIBOSWITCH
346 1qbp 0.97 78.12 1.85 72 32 25 6 No_SCOP_id 5'-R(*UP*GP*(CBV)P*(CBV) P*AP*GP*UP*UP*CP*GP*CP*UP*GP*GP*C)-3'
347 3b31 0.97 84.38 1.89 43 32 27 3 No_SCOP_id RNA (29-MER) & RNA (5'- R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3')
348 4fep 0.97 84.38 1.95 67 32 27 3 No_SCOP_id A24U/U25A/A46G/C74U MUTANT OF THE B. SUBTILIS XPT-PBUX GUANINE RIBOSWITCH APTAMER DOMAIN
349 2a04 0.97 87.50 2.08 58 32 28 7 No_SCOP_id 5'- R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G)-3' & 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)- 3'
350 3g78 0.97 93.75 2.11 398 32 30 8 No_SCOP_id GROUP II INTRON & LIGATED EXON PRODUCT
351 3gx7 0.97 90.62 2.15 94 32 29 6 No_SCOP_id RNA (94-MER)
352 397d 0.94 92.59 2.17 27 32 25 13 No_SCOP_id RNA (5'- R(*GP*GP*CP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP*CP*G)-3') & RNA (5'-R(*GP*CP*UP*CP*UP*CP*UP*GP*GP*CP*CP*C)- 3')
353 2xsl 0.91 50.00 0.33 28 32 14 4 No_SCOP_id 5'-R(*GP*CP*GP*GP*GP*AP*G)-3' & 5'-R(*CP*UP*CP*CP*CP*GP*C)-3'
354 409d 0.91 50.00 0.43 48 32 16 6 No_SCOP_id RNA (5'-R(*CP*CP*CP*IP*UP*GP*GP*G)-3')
355 283d 0.91 66.67 1.29 12 32 8 3 No_SCOP_id RNA (5'-R(*GP*GP*CP*CP*GP*AP*AP*AP*GP*GP*CP*C)- 3')
356 2hok 0.91 78.12 1.79 78 32 25 11 No_SCOP_id THI-BOX RIBOSWITCH
357 4enb 0.91 84.38 1.97 51 32 27 8 No_SCOP_id FLUORIDE RIBOSWITCH
358 3f2q 0.91 87.50 2.01 107 32 28 8 No_SCOP_id FMN RIBOSWITCH
359 4fel 0.91 84.38 2.09 67 32 27 11 No_SCOP_id U25A/A46G MUTANT OF THE B. SUBTILIS XPT-PBUX GUANINE RIBOSWITCH APTAMER DOMAIN
360 3f4h 0.91 93.75 2.31 109 32 30 13 No_SCOP_id FMN RIBOSWITCH & FMN RIBOSWITCH
361 4fen 0.85 81.25 1.89 67 32 26 3 No_SCOP_id A24U/U25A/A46G MUTANT OF THE B. SUBTILIS XPT-PBUX GUANINE RIBOSWITCH APTAMER DOMAIN
362 4g6s 0.85 78.12 1.92 59 32 25 3 No_SCOP_id LOOP A SUBSTRATE STRAND & LOOP A AND LOOP B RIBOZYME STRAND & LOOP B OF THE RIBOZYME STRAND
363 3f2w 0.85 87.50 1.94 107 32 28 1 No_SCOP_id FMN RIBOSWITCH
364 3f4e 0.85 84.38 1.97 109 32 27 7 No_SCOP_id FMN RIBOSWITCH & FMN RIBOSWITCH
365 3gs5 0.85 78.12 2.04 61 32 25 9 No_SCOP_id RNA (25-MER) & RNA (36-MER)
366 3iqp 0.85 93.75 2.09 94 32 30 12 No_SCOP_id SAM-I RIBOSWITCH
367 1t0d 0.85 96.88 2.14 64 32 31 8 No_SCOP_id 5'-R(*GP*GP*UP*GP*GP*UP*GP*(MTU) P*AP*GP*UP*CP*GP*CP*UP*GP*G)-3' & 5'- R(*CP*AP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*CP*C)-3'
368 3iqn 0.85 90.62 2.21 94 32 29 6 No_SCOP_id SAM-I RIBOSWITCH
369 1grz 0.85 96.88 2.23 494 32 31 12 No_SCOP_id LSU R-RNA GROUP I INTRON
370 3f2x 0.85 87.50 2.25 107 32 28 1 No_SCOP_id FMN RIBOSWITCH
371 3dw6 0.84 73.08 1.75 26 32 19 8 No_SCOP_id SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA
372 1mme 0.79 71.88 1.69 82 32 23 4 No_SCOP_id RNA HAMMERHEAD RIBOZYME & RNA HAMMERHEAD RIBOZYME
373 3glp 0.79 68.75 1.80 40 32 22 7 No_SCOP_id 5'-R(*GP*CP*UP*GP*CP*UP*GP*C)-3'
374 299d 0.79 78.12 1.81 41 32 25 6 No_SCOP_id RNA HAMMERHEAD RIBOZYME & RNA HAMMERHEAD RIBOZYME
375 3d2x 0.79 71.88 1.92 154 32 23 7 No_SCOP_id TPP-SPECIFIC RIBOSWITCH
376 3e5f 0.79 81.25 1.98 52 32 26 3 No_SCOP_id SMK BOX (SAM-III) RIBOSWITCH FOR RNA
377 3e5c 0.79 81.25 1.99 52 32 26 3 No_SCOP_id SMK BOX (SAM-III) RIBOSWITCH
378 1x9k 0.79 78.12 2.03 62 32 25 7 No_SCOP_id 5'-R(*UP*CP*GP*CP*AP*GP*UP*CP*CP*UP*AP*UP*U)-3' & 5'-R(*AP*AP*UP*AP*GP*AP*GP*AP*AP*GP*CP*GP*A)-3' & 5'- R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3' & 5'- R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C) -3'
379 3ox0 0.79 84.38 2.08 173 32 27 5 No_SCOP_id DOMAIN II OF GLYCINE RIBOSWITCH & DOMAIN II OF GLYCINE RIBOSWITCH
380 2w89 0.78 50.00 0.57 28 32 14 2 No_SCOP_id 5'-R(*GP*CP*AP*UP*CP*CP*GP)-3' & 5'-R(*CP*GP*GP*AP*UP*GP*CP)-3'
381 3s7c 0.77 73.08 1.96 26 32 19 2 No_SCOP_id ECOLI 23 S RRNA SARCIN RICIN LOOP
382 377d 0.75 50.00 0.80 24 32 12 0 No_SCOP_id RNA-DNA (5'-R(*CP*GP*UP*AP*CP*DG)-3')
383 357d 0.73 68.75 1.64 59 32 22 3 No_SCOP_id RNA-DNA (5'-R(*UP*GP*DCP)-D(*CP(S)*)- R(*UP*GP*GP*CP*GP*GP*C)-3') & RNA (5'- R(*CP*CP*GP*AP*UP*GP*GP*UP*AP*GP*UP*GP*UP*GP*GP*GP*G*UP*C)- 3') & RNA (5'- R(*CP*CP*CP*CP*AP*UP*GP*CP*GP*AP*GP*AP*GP*UP*AP*GP*G P*GP*AP*AP*CP*UP* GP*CP*CP*AP*GP*GP*CP*AP*U)-3')
384 1nyi 0.73 71.88 1.67 40 32 23 6 No_SCOP_id 5'- R(P*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3' & 5'- R(*GP*CP*CP*GP*AP*AP*AP*CP*UP*CP*GP*UP*AP*AP*GP*AP*GP*UP*CP *AP*CP*CP*AP*C)-3'
385 4aob 0.73 90.62 2.24 94 32 29 8 No_SCOP_id SAM-I RIBOSWITCH
386 2yie 0.73 84.38 2.26 109 32 27 4 No_SCOP_id FMN RIBOSWITCH & FMN RIBOSWITCH
387 3f4g 0.73 90.62 2.36 109 32 29 3 No_SCOP_id FMN RIBOSWITCH & FMN RIBOSWITCH
388 430d 0.71 64.29 1.63 28 32 18 3 No_SCOP_id SARCIN/RICIN LOOP FROM RAT 28S R-RNA
389 359d 0.68 78.12 1.90 41 32 25 6 No_SCOP_id RNA HAMMERHEAD RIBOZYME & RNA HAMMERHEAD RIBOZYME
390 379d 0.68 78.12 2.00 41 32 25 4 No_SCOP_id RNA (5'- R(*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3') & RNA (5'- R(*GP*GP*CP*CP*GP*AP*AP*AP*CP*UP*CP*GP*UP*AP*AP*GP*A P*GP*UP*CP*AP*CP*CP*AP*C)-3')
391 1y0q 0.68 90.62 2.02 233 32 29 6 No_SCOP_id GROUP I RIBOZYME & 5'-R(*GP*CP*UP*U)-3'
392 2cky 0.68 75.00 2.02 154 32 24 7 No_SCOP_id NUCLEIC ACID
393 4gxy 0.68 84.38 2.06 160 32 27 8 No_SCOP_id ADENOSYLCOBALAMIN RIBOSWITCH
394 2gis 0.68 90.62 2.12 94 32 29 10 No_SCOP_id SAM-I RIBOSWITCH
395 2hoo 0.68 81.25 2.13 83 32 26 7 No_SCOP_id THI-BOX RIBOSWITCH
396 488d 0.68 78.12 2.16 65 32 25 4 No_SCOP_id RNA RIBOZYME STRAND & FIRST RNA FRAGMENT OF CLEAVED SUBSTRATE & SECOND RNA FRAGMENT OF CLEAVED SUBSTRATE & UNCLEAVED RNA SUBSTRATE
397 3iqr 0.68 90.62 2.24 94 32 29 8 No_SCOP_id SAM-I RIBOSWITCH
398 435d 0.64 64.29 1.76 28 32 18 3 No_SCOP_id RNA (5'-R(*UP*AP*GP*CP*CP*CP*C)-3') & RNA (5'-R(*GP*GP*GP*GP*CP*UP*A)-3')
399 434d 0.64 64.29 1.92 28 32 18 4 No_SCOP_id RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3') & RNA (5'-R(*GP*GP*GP*GP*CP*UP*A)-3')
400 1q29 0.62 75.00 1.94 41 32 24 6 No_SCOP_id 5'- R(*GP*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3' & RIBOZYME
401 1ykv 0.62 78.12 1.97 98 32 25 6 No_SCOP_id DIELS-ALDER RIBOZYME & DIELS-ALDER RIBOZYME
402 1u9s 0.62 84.38 2.02 155 32 27 11 No_SCOP_id RIBONUCLEASE P
403 1xjr 0.62 71.88 2.06 46 32 23 5 No_SCOP_id S2M RNA
404 4e8t 0.62 93.75 2.26 395 32 30 8 No_SCOP_id GROUP IIC INTRON & 5'-R(*AP*UP*UP*UP*AP*UP*UP*A)-3'
405 2jlt 0.56 68.75 1.86 32 32 22 2 No_SCOP_id R06 & TAR
406 3bno 0.56 71.88 1.95 80 32 23 7 No_SCOP_id A SITE OF HUMAN MITOCHONDRIAL RIBOSOME
407 361d 0.56 71.88 1.98 40 32 23 5 No_SCOP_id RNA (5'- R(*CP*UP*GP*GP*GP*CP*GP*GP*GP*CP*GP*AP*CP*CP*GP*CP*C P*UP*GP*G)-3')
408 4frn 0.56 84.38 2.03 204 32 27 7 No_SCOP_id COBALAMIN RIBOSWITCH APTAMER DOMAIN
409 3ivn 0.56 84.38 2.16 138 32 27 13 No_SCOP_id A-RIBOSWITCH
410 3bnt 0.51 66.67 1.89 21 32 14 2 No_SCOP_id A SITE OF HUMAN MITOCHONDRIAL RIBOSOME
411 466d 0.51 64.29 1.98 28 32 18 3 No_SCOP_id RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3') & RNA (5'-R(*GP*GP*GP*GP*CP*UP*A)-3')
412 3ftm 0.50 68.75 1.76 46 32 22 4 No_SCOP_id 5'-R(*GP*UP*GP*UP*GP*AP*GP*GP*CP*UP*G)-3' & 5'-R(*CP*CP*AP*GP*UP*CP*GP*GP*AP*AP*CP*A)-3'
413 3k1v 0.49 65.52 1.77 29 32 19 3 No_SCOP_id PREQ1 RIBOSWITCH
414 483d 0.46 77.78 2.04 27 32 21 6 No_SCOP_id SARICIN/RICIN RRNA DOMAIN
415 3mij 0.45 58.33 1.73 12 32 7 3 No_SCOP_id RNA (5'-R(*UP*AP*GP*GP*GP*UP*UP*AP*GP*GP*GP*U)-3')
416 1q96 0.45 62.50 1.94 81 32 20 4 No_SCOP_id SARCIN/RICIN 28S RRNA
417 1nuj 0.45 65.62 1.95 96 32 21 6 No_SCOP_id 5'-R(*CP*GP*GP*AP*CP*CP*GP*AP*GP*CP*CP*AP*G)-3' & 5'-R(*GP*CP*UP*GP*GP*GP*AP*GP*UP*CP*C)-3'
418 2hop 0.45 81.25 2.14 76 32 26 7 No_SCOP_id THI-BOX RIBOSWITCH
419 3f2t 0.45 81.25 2.18 107 32 26 7 No_SCOP_id FMN RIBOSWITCH
420 3e5e 0.45 78.12 2.31 52 32 25 7 No_SCOP_id SMK BOX (SAM-III) RIBOSWITCH FOR RNA
421 3cw6 0.45 87.50 2.36 72 32 28 5 No_SCOP_id INITIATOR TRNA
422 3pdr 0.45 93.75 2.45 322 32 30 5 No_SCOP_id M-BOX RIBOSWITCH RNA
423 2a43 0.41 69.23 2.25 26 32 18 6 No_SCOP_id RNA PSEUDOKNOT
424 1kd5 0.40 68.18 2.09 22 32 15 5 No_SCOP_id 5'-R(*GP*GP*UP*CP*AP*CP*AP*GP*CP*CP*C)-3'
425 1sa9 0.39 50.00 1.23 40 32 16 2 No_SCOP_id 5'-R(*GP*GP*CP*GP*AP*GP*CP*C)-3'
426 2g3s 0.39 68.75 1.80 80 32 22 5 No_SCOP_id 5'-R(*GP*GP*CP*GP*UP*GP*CP*C)-3'
427 301d 0.39 75.00 2.01 41 32 24 3 No_SCOP_id RNA HAMMERHEAD RIBOZYME & RNA HAMMERHEAD RIBOZYME
428 2qwy 0.39 84.38 2.25 156 32 27 5 No_SCOP_id SAM-II RIBOSWITCH
429 3bnq 0.39 84.38 2.31 86 32 27 10 No_SCOP_id A SITE OF HUMAN MITOCHONDRIAL RIBOSOME, A CHAIN & A SITE OF HUMAN MITOCHONDRIAL RIBOSOME, B CHAIN
430 4fb0 0.39 96.88 2.48 392 32 31 10 No_SCOP_id GROUP IIC INTRON
431 1saq 0.33 50.00 1.30 40 32 16 1 No_SCOP_id 5'-R(*GP*IP*CP*GP*AP*GP*CP*C)-3'
432 3d2v 0.33 71.88 2.10 154 32 23 7 No_SCOP_id TPP-SPECIFIC RIBOSWITCH
433 1l3d 0.33 66.67 1.96 27 32 18 7 No_SCOP_id RNA PSEUDOKNOT
434 1jzv 0.29 50.00 1.44 30 32 15 5 No_SCOP_id 5'-R(*GP*GP*CP*GP*AP*CP*(5BU)P*G)-3' & 5'-R(*CP*AP*GP*UP*AP*CP*GP*(5IC)P*C)-3'
435 3r1d 0.27 62.50 1.91 50 32 20 2 No_SCOP_id RNA (5'-R(*GP*CP*(GRB)P*GP*CP*GP*GP*CP*GP*GP*C)-3')
436 429d 0.27 65.62 2.09 48 32 21 5 No_SCOP_id RNA (5'- R(*CP*GP*GP*AP*CP*CP*GP*AP*GP*CP*CP*AP*G)-3') & RNA (5'-R(*GP*CP*UP*GP*GP*GP*AP*GP*UP*CP*C)-3')
437 1yls 0.27 71.88 2.21 86 32 23 9 No_SCOP_id RNA DIELS-ALDER RIBOZYME & RNA DIELS-ALDER RIBOZYME
438 4b5r 0.27 87.50 2.29 94 32 28 11 No_SCOP_id SAM-I RIBOSWITCH
439 387d 0.27 57.69 1.87 26 32 15 3 No_SCOP_id RNA PSEUDOKNOT
440 1kd3 0.23 72.73 2.28 22 32 16 2 No_SCOP_id 5'-R(*GP*GP*UP*CP*AP*CP*AP*GP*CP*CP*C)-3'
441 3oxb 0.21 87.50 2.37 172 32 28 13 No_SCOP_id DOMAIN II OF GLYCINE RIBOSWITCH & DOMAIN II OF GLYCINE RIBOSWITCH
442 3p22 0.21 93.75 2.50 190 32 30 9 No_SCOP_id CORE ENE HAIRPIN FROM KSHV PAN RNA & OLIGO(A)9 RNA
443 3f2y 0.21 87.50 2.51 107 32 28 5 No_SCOP_id FMN RIBOSWITCH
444 1ntb 0.16 62.50 1.84 40 32 20 4 No_SCOP_id 5'- R(*GP*GP*AP*UP*CP*GP*CP*AP*UP*UP*UP*GP*GP*AP*CP*UP*UP*CP*UP *GP*CP*C)-3' & 5'- R(*CP*GP*GP*CP*AP*CP*CP*AP*CP*GP*GP*UP*CP*GP*GP*AP*UP*C)- 3'
445 3r1c 0.16 65.62 2.05 288 32 21 10 No_SCOP_id RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3')
446 2il9 0.16 87.50 2.35 267 32 28 10 No_SCOP_id RIBOSOMAL BINDING DOMAIN OF THE IRES RNA
447 3oww 0.16 87.50 2.42 172 32 28 13 No_SCOP_id DOMAIN II OF GLYCINE RIBOSWITCH & DOMAIN II OF GLYCINE RIBOSWITCH
448 3s49 0.16 87.50 2.45 49 32 28 4 No_SCOP_id RNA (5'-R(*GP*UP*AP*UP*AP*(RUS)P*AP*C)-3')
449 354d 0.14 82.61 2.32 23 32 19 6 No_SCOP_id RNA (5'-R(*CP*CP*GP*AP*UP*GP*GP*UP*AP*GP*UP*G)-3') & RNA-DNA (5'-R(*GP*CP*GP*AP*GP*AP*GP*UP*AP*)-D(*DGP(S)*)- R(*GP*C)-3')
450 3bnp 0.10 75.00 2.28 43 32 24 7 No_SCOP_id A SITE OF HUMAN MITOCHONDRIAL RIBOSOME, A CHAIN & A SITE OF HUMAN MITOCHONDRIAL RIBOSOME, B CHAIN
451 2gdi 0.10 78.12 2.46 156 32 25 2 No_SCOP_id TPP RIBOSWITCH
452 4e58 0.07 95.00 2.56 20 32 19 7 No_SCOP_id RNA DUPLEX CONTAINING CCG REPEATS
453 3gca 0.04 53.12 1.88 33 32 17 5 No_SCOP_id PREQ1 RIBOSWITCH
454 3cw5 0.04 81.25 2.45 72 32 26 6 No_SCOP_id INITIATOR TRNA
455 3d2g 0.04 75.00 2.48 154 32 24 9 No_SCOP_id TPP-SPECIFIC RIBOSWITCH
456 3owi 0.04 87.50 2.53 173 32 28 12 No_SCOP_id DOMAIN II OF GLYCINE RIBOSWITCH & DOMAIN II OF GLYCINE RIBOSWITCH
457 3ok2 -0.02 50.00 1.61 30 32 15 3 No_SCOP_id (A6C)(A6C)(A6G)(A6U)(A6A)(A6A)(A6U)(A6G)(A6C)(A6C)(PO4) & GGCAUUACGG
458 1f1t -0.02 68.75 2.14 33 32 22 2 No_SCOP_id MALACHITE GREEN APTAMER RNA
459 1nta -0.02 68.75 2.22 40 32 22 7 No_SCOP_id 5'- R(*GP*GP*AP*UP*CP*GP*CP*AP*UP*UP*UP*GP*GP*AP*CP*UP*UP*CP*UP *GP*CP*C)-3' & 5'- R(*CP*GP*GP*CP*AP*CP*CP*AP*CP*GP*GP*UP*CP*GP*GP*AP*UP*C)- 3'
460 3fu2 -0.02 62.50 2.22 94 32 20 2 No_SCOP_id PREQ1 RIBOSWITCH
461 3oxm -0.08 87.50 2.52 173 32 28 11 No_SCOP_id DOMAIN II OF GLYCINE RIBOSWITCH & DOMAIN II OF GLYCINE RIBOSWITCH
462 1l2x -0.09 62.96 2.26 27 32 17 6 No_SCOP_id RNA PSEUDOKNOT
463 3q51 -0.13 46.88 1.83 32 32 15 4 No_SCOP_id PREQ1 RIBOSWITCH
464 1ddy -0.13 53.12 1.96 140 32 17 4 No_SCOP_id VITAMIN B12 BINDING RNA
465 3nj7 -0.13 46.88 2.05 60 32 15 3 No_SCOP_id 5'-R(*GP*GP*CP*AP*GP*CP*AP*GP*CP*C)-3'
466 1q93 -0.13 65.62 2.23 81 32 21 6 No_SCOP_id SARCIN/RICIN 28S RRNA
467 1msy -0.16 77.78 2.47 27 32 21 4 No_SCOP_id SARCIN/RICIN DOMAIN FROM 23 S RRNA
468 437d -0.16 62.96 2.49 27 32 17 6 No_SCOP_id RNA PSEUDOKNOT
469 1j9h -0.19 50.00 1.81 32 32 16 4 No_SCOP_id 5'-R(*GP*UP*GP*UP*CP*GP*(CBR)P*AP*C)-3'
470 1et4 -0.19 56.25 2.19 175 32 18 4 No_SCOP_id RNA APTAMER, 35-MER
471 1duh -0.25 43.75 1.61 44 32 14 5 No_SCOP_id 4.5S RNA DOMAIN IV
472 3q50 -0.25 53.12 2.25 33 32 17 5 No_SCOP_id PREQ1 RIBOSWITCH
473 300d -0.25 71.88 2.39 41 32 23 7 No_SCOP_id RNA HAMMERHEAD RIBOZYME & RNA HAMMERHEAD RIBOZYME
474 3ibk -0.35 45.45 1.75 22 32 10 2 No_SCOP_id RNA (5'-R(*(5BU)P*AP*GP*GP*GP*UP*UP*AP*GP*GP*GP*U)-3')
475 3ok4 -0.37 50.00 2.05 150 32 16 5 No_SCOP_id ANA & RNA
476 2grb -0.37 53.12 2.12 40 32 17 3 No_SCOP_id 5'-R(*(U33)P*GP*IP*GP*GP*U)-3'
477 1nuv -0.37 68.75 2.55 96 32 22 0 No_SCOP_id 5'-R(*CP*GP*GP*AP*CP*CP*GP*AP*GP*CP*CP*AP*G)-3' & 5'-R(*GP*CP*UP*GP*GP*GP*AP*GP*UP*CP*C)-3'
478 1j6s -0.41 31.58 1.15 19 32 6 2 No_SCOP_id 5'-R(*(BRUP*GP*AP*GP*GP*U)-3'
479 1j8g -0.56 33.33 1.74 24 32 8 0 No_SCOP_id 5'-R(*UP*GP*GP*GP*GP*U)-3'
480 1p79 -1.87 0 0 5 32 0 0 No_SCOP_id 5'-R(*UP*GP*UP*GP*GP*U)-3'
481 2awe -1.87 0 0 39 32 0 0 No_SCOP_id 5'-R(*UP*(BGM)P*GP*UP*GP*U)-3'
482 2g32 -1.87 0 0 0 32 0 0 No_SCOP_id RNA (5'-R(*(0C)P*(0U)P*(0G)P*(0G)P*(0G)P*(0C)P*(0G)P*(0G))- 3') & RNA (5'-R(*(0C)P*(0C)P*(0G)P*(0C)P*(0C)P*(0U)P*(0G)P*(0G))- 3')
483 2gpm -1.87 0 0 0 32 0 0 No_SCOP_id RNA (5'-R(*(0C)P*(0U)P*(0G)P*(0G)P*(0G)P*(0C)P*(0G)P*(0G))- 3') & RNA (5'-R(*(0C)P*(0C)P*(0G)P*(0C)P*(0C)P*(0U)P*(0G)P*(0G))- 3')
484 2gq4 -1.87 0 0 0 32 0 0 No_SCOP_id RNA (5'-R(*(0C)P*(0U)P*(0G)P*(0G)P*(0G)P*(0C)P*(0G)P*(0G))- 3') & RNA (5'-R(*(0C)P*(0C)P*(0G)P*(0C)P*(0C)P*(0U)P*(0G)P*(0G))- 3')
485 2gq5 -1.87 0 0 0 32 0 0 No_SCOP_id RNA (5'-R(*(0C)P*(0U)P*(0G)P*(0G)P*(0G)P*(0C)P*(0G)P*(0G))- 3') & RNA (5'-R(*(0C)P*(0C)P*(0G)P*(0C)P*(0C)P*(0U)P*(0G)P*(0G))- 3')
486 2gq6 -1.87 0 0 0 32 0 0 No_SCOP_id RNA (5'-R(*(0C)P*(0U)P*(0G)P*(0G)P*(0G)P*(0C)P*(0G)P*(0G))- 3') & RNA (5'-R(*(0C)P*(0C)P*(0G)P*(0C)P*(0C)P*(0U)P*(0G)P*(0G))- 3')
487 2gq7 -1.87 0 0 0 32 0 0 No_SCOP_id RNA (5'-R(*(0C)P*(0U)P*(0G)P*(0G)P*(0G)P*(0C)P*(0G)P*(0G))- 3') & RNA (5'-R(*(0C)P*(0C)P*(0G)P*(0C)P*(0C)P*(0U)P*(0G)P*(0G))- 3')
488 3p4b -1.87 0 0 24 32 0 0 No_SCOP_id 5'-R(*(CFZ)P*GP*(AF2)P*AP*(UFT)P*UP*(CFZ)P*G)-3'
489 3p4c -1.87 0 0 8 32 0 0 No_SCOP_id 5'-R(*(CFZ)P*GP*(AF2)P*AP*(UFT)P*UP*(CFZ)P*G)-3'
490 3p4d -1.87 0 0 8 32 0 0 No_SCOP_id 5'-R(*(CFZ)P*CP*(CFZ)P*CP*(GF2)P*GP*(GF2)P*G)-3'

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