The PDB structure is the primary input to the server. The PDB structure can
be
specified
in the following ways:
1. By writing the four letter valid PDB complex code
2. By uploading a valid PDB file.
Caution: If a wrong PDB code is entered or if the uploaded file is not a
valid
PDB file then the job will be rejected by the server and the user will be
informed
of the respective error.
The number of cycle to run depth, default is 25.
The number of neighbor water in depth calculation, default is 2.
Solvent Radius, default is 4.2
The resolution for solvent accessible surface area calculation, default is 92.
Probe radius for solvent accessible surface area calculation, default is 1.4.
Uses Blast
Blast Iterations
Blast e_thr
Blast maxSeq
Neighbourhood waters
Prob Threshold
The number of cycle to run depth, default is 25.
The number of neighbor water in depth calculation, default is 2.
Solvent Radius, default is 4.2
The cut-off distance for electrostatic calculation, default is 12.
If the user provide an email address then an email notification will
be
sent
to
inform the user about the job completion or unexpected termination
of
the
job.
It is advised that a valid and active email address must be provided
to
receive
notifications
about the job status.