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Reference

Citing TSpred Server

Please cite the following articles when you use TSpred server

  1. Kuan Pern Tan, Shruti Khare, Raghavan Varadarajan and Mallur Srivatsan Madhusudhan. TSpred: a web server for the rational design of temperature-sensitive mutants. Nucl. Acids Res 2014.

  2. R. Varadarajan, H. A. Nagarajaram, and C. Ramakrishnan. A procedure for the prediction of temperature-sensitive mutants of a globular protein based solely on the amino acid sequence PNAS 1996 93 (24) 13908-13913.

Supporting Articles

  1. Kuan Pern Tan, Shruti Khare, Raghavan Varadarajan and Mallur Srivatsan Madhusudhan. TSpred: a web server for the rational design of temperature-sensitive mutants. Nucl. Acids Res 2014.

    (full text article)

  2. R.Varadarajan, H.A.Nagarajaram, and C.Ramakrishnan. A procedure for the prediction of temperature-sensitive mutants of a globular protein based solely on the amino acid sequence PNAS 1996 93 (24) 13908-13913.

    (full text article)

  3. Chakshusmathi, G., Mondal, K., Lakshmi, G. S., Singh, G., Roy, A., Ch, R. B., Madhusudhanan, S., and Varadarajan, R. Design of temperature-sensitive mutants solely from amino acid sequence. PNAS 2004, 7925-30.

    (full text article)

  4. Mondal, K., Dastidar, A. G., Singh, G., Madhusudhanan, S., Gande, S. L., Vijayraghavan, K., and Varadarajan, R. Design and Isolation of Temperature-sensitive Mutants of Gal4 in Yeast and Drosophila. J Mol Biol 2007 370, 939-50.

    (link to article)

  5. Mondal, K., VijayRaghavan, K., and Varadarajan, R. Design and utility of temperature-sensitive Gal4 mutants for conditional gene expression in Drosophila. Fly (Austin) 2007 1, 282-6.

    (link to article)

  6. Bajaj, K., Dewan, P. C., Chakrabarti, P., Goswami, D., Barua, B., Baliga, C., and Varadarajan, R. Structural correlates of the temperature sensitive phenotype derived from saturation mutagenesis studies of CcdB. Biochemistry 2008 47, 12964-73.

    (link to article)

  7. Kuan Pern Tan, Thanh Binh Nguyen, Siddharth Patel, Raghavan Varadarajan, and M. S. Madhusudhan. Depth: a web server to compute depth, cavity sizes, detect potential small-molecule ligand-binding cavities and predict the pKa of ionizable residues in proteins Nucl. Acids Res. (1 July 2013) 41 (W1): W314-W321

    (full text article)

  8. Kuan Pern Tan, Raghavan Varadarajan, and M. S. Madhusudhan. DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins. Nucl. Acids Res. 2011

    (link to article)

  9. Suvobrata Chakravarty, Raghavan Varadarajan, Residue depth: a novel parameter for the analysis of protein structure and stability, Structure, Volume 7, Issue 7, 15 July 1999, 723-732

    (link to article)